Baker Institute for Animal Health



Baker Institute Recent Publications

*For a full copy of those publications not publicly available, please contact us to request a copy. 

February 2023

Prasanna Weeratunga, Rebecca M. Harman and Gerlinde R. Van de Walle. Induced pluripotent stem cells from domesticated ruminants and their potential for enhancing livestock production. Front Vet Sci. 2023 Feb 20;10:1129287

PMID: 36891466

PMCID: PMC9986305

Laura E. M. Dunn, Fang Lu, Chenhe Su, Paul M. Lieberman and Joel D. Baines. Reactivation of Epstein-Barr Virus from Latency Involves Increased RNA Polymerase Activity at CTCF Binding Sites on the Viral Genome. J Virol. 2023 Feb 28;97(2):e0189422.

DOI: 10.1128/jvi.01894-22

PMID: 36744959

PMCID: PMC9972995

Nagaraja R Thirumalapura, Julia Livengood, John Beeby, Weihua Wang, Erin L Goodrich, Laura B Goodman, Erdal Erol, Deepanker Tewari. Improved molecular detection of Neorickettsia risticii with a duplex real-time PCR assay in the diagnosis of Potomac horse fever. J Vet Diagn Invest

. 2023 Jan;35(1):62-66.

doi: 10.1177/10406387221135184

PMID: 36373552

PMCID: PMC9751466

Sara E McBride, Brandon A Lieberthal, Danielle E Buttke, Brittany D Cronk, Sandra M De Urioste-Stone SM, Laura B Goodman, Lucy D Guarnieri, Thomas F Rounsville, Allison M Gardner. Patterns and Ecological Mechanisms of Tick-Borne Disease Exposure Risk in Acadia National Park, Mount Desert Island, Maine, United StatesJ Med Entomol. 2023 Jan 12;60(1):62-72. 

doi: 10.1093/jme/tjac152

PMID: 36271802

December 2022

Jonathan W Villanueva, Lawrence Kwong, Teng Han, Salvador Alonso Martinez, Michael T Shanahan, Matt Kanke, Lukas E Dow, Charles G Danko, Praveen Sethupathy. Comprehensive microRNA analysis across genome-edited colorectal cancer organoid models reveals miR-24 as a candidate regulator of cell survival. BMC Genomics. 2022 Dec 1;23(1):792.

DOI: 10.1186/s12864-022-09018-1

PMID: 36457077

PMCID: PMC9716731

November 2022

Sonsiray Alvarez Narvaez, Zhenyu Shen, Lifang Yan, Brianna L S Stenger, Laura B Goodman, Ailam Lim, Ruth H Nissly, Meera Surendran Nair, Shuping Zhang, Susan Sanchez. Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis. PLoS One. 2022 Nov 30;17(11):e0277659.

DOI: 10.1371/journal.pone.0277659

PMID: 36449522

PMCID: PMC9710801

Nating Wang, Zhong Wang, Charles G. Danko and Tinyi Chu. Mapping Transcription Regulation with Run-on and Sequencing Data Using the Web-Based tfTarget Gateway. Methods Mol Biol. 2023;2599:215-226.

DOI: 10.1007/978-1-0716-2847-8_15

  • PMID: 36427152

Mason C Jager, Joy E Tomlinson, Caitlin E Henry, Megan J Fahey, Gerlinde R Van de Walle. Prevalence and pathology of equine parvovirus-hepatitis in racehorses from New York racetracks. Virol J. 2022 Nov 1;19(1):175.

DOI: 10.1186/s12985-022-01901-3

PMID: 36320007

PMCID: PMC9628030

Jessika-M V Cavalleri, Orsolya Korbacska-Kutasi, Agnès Leblond, Romain Paillot, Nicola Pusterla, Eike Steinmann, Joy Tomlinson. European College of Equine Internal Medicine consensus statement on equine flaviviridae infections in Europe. J Vet Intern Med. 2022 Nov;36(6):1858-1871.

DOI: 10.1111/jvim.16581. Epub 2022 Nov 11.

PMID: 36367340

PMCID: PMC9708432

Laura E M Dunn, Claire H Birkenheuer, Rachel Dufour and Joel D Baines. Immediate Early Proteins of Herpes Simplex Virus Transiently Repress Viral Transcription before Subsequent Activation. J Virol. 2022 Nov 23;96(22):e0141622.

DOI: 10.1128/jvi.01416-22.

PMID: 36300939

PMCID: PMC9683018

October 2022

Kelly L. Sams, Chinatsu Mukai, Brooke A. Marks, Chitvan Mittal, Elena Alina Demeter, Sophie Nelissen, Jennifer K. Grenier, Ann E. Tate, Faraz Ahmed & Scott A. Coonrod. Delayed puberty, gonadotropin abnormalities and subfertility in male Padi2/Padi4 double knockout mice. Rep Bio Endoc. 17 Oct 2022. Volume 20, Article number: 150.

DOI: 10.1186/s12958-022-01018-w

Joy E. Tomlinson, Gerlinde R. Van de Walle. Nasal transmission of equine parvovirus hepatitis. J Vet Med. 17 Oct 2022

DOI: 10.1111/jvim.16569

PMID: 36250682

PMCID: PMC9708389

James L. Miller, Matt Kanke, Gat Rauner, Kimaya M. Bakhle, Praveen Sethupathy & Gerlinde R. Van de Walle. Comparative Analysis of microRNAs that Stratify in vitro Mammary stem and Progenitor Activity Reveals Functionality of Human miR-92b-3p. J Mammary Gland Biol Neoplasia. . 2022 Oct 3.

PMID: 36190643

DOI: /10.1007/s10911-022-09525-7

September 2022

Kaiping Deng, Steffen Uhlig, Laura B Goodman, Hon S Ip, Mary Lea Killian, Sarah M Nemser, Jodie Ulaszek, Shannon Kiener, Matthew Kmet, Kirstin Frost, Karina Hettwer, Bertrand Colson, Kapil Nichani, Anja Schlierf, Andriy Tkachenko, Mothomang Mlalazi-Oyinloye, Andrew Scott, Ravinder Reddy, Gregory H Tyson. Second round of an interlaboratory comparison of SARS-CoV2 molecular detection assays used by 45 veterinary diagnostic laboratories in the United States. J Vet Diagn Invest. 2022 Sep;34(5):825-834

DOI: 10.1177/10406387221115702

PMID: 35983593

PMCID: PMC9446291

Consuelo B. Correa Sierra, Luis M. Schang. On the Sensitivity of the Virion Envelope to Lipid Peroxidation. Virology. 20 Sept 2022.

DOI: 10.1128/spectrum.03009

Tom J Divers, Joy E Tomlinson, Bud C Tennant. The history of Theiler's disease and the search for its aetiology. Vet J. 2022 Sep;287:105878.

DOI: 10.1016/j.tvjl.2022.105878

PMID: 35907440

August 2022

Yidan Zhang, Young W. Choi, Buket Demir, Fatemeh Ekbataniamiri, M. L. Fulton, Mingli Ma, Luis M. Schang, Laura Purevdorj-Gage and Mingyu Qiao. Novel chlorine-extending polymer coating with prolonged antiviral activity against SARS-CoV-2. App Micro Int’l. 15 Aug 2022

PMID: 35965454

David W. McKellar, Madhav Mantri, Meleana Hinchman, John S.L. Parker, Praveen Sethupathy, Benjamin D. Cosgrove, Iwijn De Vlaminck. In situ polyadenylation enables spatial mapping of the total transcriptomeBioRXiv. 21 Apr 2022. Pre-print

DOI: 10.1101/2022.04.20.488964v1

Rebecca M. Harman, Katherine A. Churchill, Sonia Parmar and Gerlinde R. Van de Walle. Mesenchymal stromal cells isolated from chicken peripheral blood secrete bioactive factors with antimicrobial and regenerative properties. Front. Vet. Sci. 24 Aug 2022.

DOI: 10.3389/fvets.2022.949836

PMID: 36090169

PMCID: PMC9449329

James Miller, Matt Kante, Gat Rauner, Kimaya M. Bakhle, Praveen Sethupathy, Gerlinde Van de Walle. Comparative analysis of microRNAs that stratify in vitro mammary stem and progenitor activity reveals functionality of human miR-92b-3p.Journal of Mammy Gland Biology & Neoplasia. 9:949836.

DOI: 10.1007/s10911-022-09525-7

PMID: 36190643

Madhav Mantri, Meleana M. Hinchman, David W. McKellar, Michael F. Z. Wang, Shaun T. Cross, John S. L. Parker, Iwijn De Vlaminck, Spatiotemporal transcriptomics reveals pathogenesis of viral myocarditis. BioRXiv. Pre-print

DOI: 10.1101/2021.12.07.471659

Kaiping DengSteffen UhligLaura B GoodmanHon S IpMary Lea KillianSarah M NemserJodie UlaszekShannon KienerMatthew KmetKirstin FrostKarina HettwerBertrand ColsonKapil NichaniAnja SchlierfAndriy TkachenkoMothomang Mlalazi-OyinloyeAndrew ScottRavinder ReddyGregory H Tyson . Second round of an interlaboratory comparison of SARS-CoV2 molecular detection assays used by 45 veterinary diagnostic laboratories in the United StatesJ Vet Diagn Invest. 2022 Aug 18;10406387221115702.

DOI: 10.1177/10406387221115702. 

PMID: 35983593

July 2022

Ola Diebold, Victoria Gonzalez, Luca Venditti, Colin Sharp, Rosemary A Blake, Wenfang Tan, Joanne Stevens, Sarah Caddy, Paul Digard, Alexander Borodavka, Eleanor Gaunt. Using Species a Rotavirus Reverse Genetics to Engineer Chimeric Viruses Expressing SARS-CoV-2 Spike Epitopes. J Virol. 2022 Jul 27;96(14):e0048822.

DOI: 10.1128/jvi.00488-22

PMID: 35758692

PMCID: PMC9327695

James L. Miller, Arianna P. Bartlett, Rebecca M. Harman, and Gerlinde R. Van de Walle. Induced mammary cancer in rat models: pathogenesis, genetics, and relevance to female breast cancer. Journal of Mammary Gland Biology and Neoplasia. 29 July 2022.

DOI: 10.1007/s10911-022-09522-w

PMID: 35904679

Shao-Pei Chou, Adriana K Alexander, Edward J Rice, Lauren A Choate, Charles G Danko. Genetic dissection of the RNA polymerase II transcription cycle. Elife. Vol. 11, p. e78458.

DOI: 10.7554/eLife.78458

PMID: 35775732

PMCID: PMC9286732

Charles Danko, Gilad Barshad, James Lewis, Alexandra Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward Rice, Oliver J Rando, Anna-Katerina Hadjantonakis. RNA polymerase II and PARP1 shape enhancer-promoter contacts. Research Square. 26 Jul 2022. Pre-print.


Fiscal Year 2022 Publications
Fiscal Year 2021 Publications
Fiscal Year 2020 Publications
Fiscal Year 2019 Publications
Fiscal Year 2018 Publications
Fiscal Year 2017 Publications