Baker Institute for Animal Health

DEDICATED TO THE STUDY OF VETERINARY INFECTIOUS DISEASES, IMMUNOLOGY, CANCER, REPRODUCTION, GENOMICS AND EPIGENOMICS

Publications

Baker Institute Recent Publications

*For a full copy of those publications not publicly available, please contact us to request a copy. 
 

October 2020

Harman Rebecca M, Das Sanjna P, Bartlett Arianna P, Rauner Gat, Donahue Leanne R, Van de Walle Gerlinde R. (2020) Beyond tradition and convention: benefits of non-traditional model organisms in cancer research. Cancer Metastasis Rev.  2020 Oct 28.

September 2020

Wodarz Dominik, Schang Luis M., Komarova N Natalia L (2020) Patterns of the COVID19 pandemic spread around the world: exponential vs. power laws. Journal of the Royal Society Interface.  30 Sep 2020 – 01:10

Meliopoulos Victoria, Cherry Sean, Wohlgemuth Nicholas, Honce Rebekah, Barnard Karen, Gauger Phillip, Davis Todd, Shult Peter, Parrish Colin, Schultz-Cherry Stacey (2020)Primary swine respiratory epithelial cell lines for the efficient isolation and propagation of influenza A viruses. J Virol. 2020 Sep 23:JVI.01091-20

August 2020

Roebke Katherine E, Yingying Guo, Parker John SL, Danthi Pranav. Reovirus σ3 protein limits interferon expression and cell death inductionBioRxiv. 2020 August.

Tallmadge Rebecca L, Antczak Douglas F, Felippe Maria Julia Bevilaqua. Genetics of Immune Disease in the Horse Nucleic Acids Research. 2019 June 20;47(11). Vet Clin of North America, Equine Practice. Volume 36, Issue 2, August 2020, 273-288.

July 2020

Tomlinson Joy E, Wolfisberg Raphael, Fahnøe Ulrik, Sharma Himanshu, Renshaw Randall W, Nielsen Louise, Nishiuchi Eiko, Holm Christina, Dubovi Edward, Rosenberg Brad R, Tennant Bud C, Bukh Jens, Kapoor Amit, Divers Thomas J, Rice Charles M, Van de Walle Gerlinde R, Scheel Troels K H. (2020) Equine pegiviruses cause persistent infection of bone marrow and are not associated with hepatitis. PLoS Pathog. 2020 Jul 10;16(7):e1008677.

Fortier Lisa Ann, Goodrich Laurie Ruth, Ribitsch Iris, Schnabel Lauren Virginia,  Shepard David Owen,  Van de Walle Gerlinde R Watts Ashlee Elizabeth, Smith Roger Kenneth Whealands. One health in regenerative medicine: report on the second Havemeyer symposium on regenerative medicine in horses. Regen Med. 2020 Jun;15(6):1775-1787.

June 2020

Cosgrove Elissa J, Sadeghi Raheleh, Schlamp Florencia, Holl Heather M. Moradi-Shahrbabak Mohammad, Miraei-Ashtiani Seyed Reza, Adballa Salma, Shykind Ben, Troedsson Mats, Stefaniuk-Szmukier Monika, Prabhu Anil, Bucca Stefania, Bugno-Poniewiersak Monika, Wallmer Barbara, Malek Joel, Miller Donald C., Clark Andrew G, Antczak Douglas F., Brooks, Samantha A. Genome Diversity and the Origin of the Arabian Horse. Scientific Reports.16 June 2020

May 2020

Mukai Chinatsu; Eunju Choi; Sams Kelly L; Klampen Elena Zu; Anguish Lynne; Marks Brooke A; Rice Edward J; Wang Zhong; Choate Lauren A; Chou Shao-Pei; Kato Yukinari; Miller Andrew; Danko Charles G; Coonrod Scott A. Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis. BMC Veterinary Research. 28 May 2020.

April 2020

Barnard Karen N, Alford-Lawrence Brynn K, Buchholz David W, Wasik Brian R, LaClair Justin R, Yu Hai, Honce Rebekah, Ruhl Stefan, Pajic Petar, Daugherity Erin K, Chen Xi, Schultz-Cherry Stacey L, Aguilar Hector C, Varki Ajit, Parrish Colin R. Modified sialic acids on mucus and erythrocytes inhibit influenza A HA and NA functions. J Virol. 2020 Apr 16; ;94(9):e01567-19.

March 2020

Harman Rebecca M, Theoret Christine L, Van de Walle Gerlinde R. The Horse as a Model for the Study of Cutaneous Wound Healing. Advances in Wound Care. 20 Mar 2019.

Marx Charlotte, Gardner Sophia, Harman Rebecca M, Van de Walle Gerlinde R. The c stromal cell (MSC) secretome impairs methicillin-resistant Staphylococcus aureus (MRSA) biofilms via cysteine protease activity in the equine model. Stem Cells Transl Med. 2020 Mar 26.

Vengust Modest, Jager Mason C, Zalig Valetina, Cociancich Vasilij, Laverack Melissa, Renshaw Randall W, Dubovi Edward, Tomlinson Joy E, Van de Walle Gerlinde R, Divers Thomas J. First report of Equine Parvovirus-Hepatitis-associated Theiler’s disease in Europe. Equine Vet. Journal BEVA. 2020 Mar 07.

Tomlinson Joy E, Jager Mason, Struzyna Alyssa, Lavrack Melissa, Fortier Lisa A, Dubovi Edward, Foil Lane D, Burbelo Peter D, Divers Thomas J, Van de Walle Gerlinde R. Tropism, pathology, and transmission of equine parvovirus-hepatitis. Emerging Microbes & Infections. 2020 Mar 20, 651-663.

February 2020

Nguyen Tri., Lee, Sohyoung, Yang Yi-An, Ahn Changwan, Sim Ji Hyun, Kei Tiffany G., Barnard Karnard N, Yu Hai, Millano Shawn K, Chen Xi, Parrish, Colin R, Song, Jeongmin. The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication. PLoS Pathog. 2020 Feb 21;16(2).

December 2019

Wasik Brian R, Voorhees Ian EH, Barnard Karen N, Alford-Lawrence Brynn K, Weichert Wendy S, Hood Grace, Nogales Aitor, Martínez-Sobrido Luis, Holmes Edward C, Parrish Colin RInfluenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural VariationJ Virol. 2019 Dec 1;93(23). 

Barnard Karen N, Wasik Brian R, LaClair JR, Buchholz DW, Weichert Wendy S, Alford-Lawrence Brynn K, Aguilar Hector C, Parrish Colin R. Expression of 9-O- and 7,9-O-Acetyl Modified Sialic Acid in Cells and Their Effects on Influenza Viruses. mBio. 2019 Dec 3;10(6).

Wasik Brian R, Voorhees Ian EH, Parrish Colin RCanine and Feline InfluenzaCold Spring Harb Perspect Med. 2019 Dec 30;

Voorhees Ian EH, Lee Hyunwook, Allison Andrew B, Lopez-Astacio Robert, Goodman Laura B, Oyesola Oyebola O, Omobowale Omobowale, Fagbohun Olusegun, Dubovi Edward J, Hafenstein Susan L, Holmes Edward C, Parrish Colin RLimited Intrahost Diversity and Background Evolution Accompany 40 Years of Canine Parvovirus Host Adaptation and Spread. J Virol. 2019 Dec 12;94(1). 

Kshitiz, Afzal Junaid, Maziarz Jamie D, Hamidzadeh Archer, Liang Cong, Erkenbrack Eric M, Kim Hong Nam, Haeger Jan-Dirk, Pfarrer Christiane, Hoang Thomas, Ott Troy, Spencer Thomas, Pavličev Mihaela, Antczak Douglas F, Levchenko Andrea, Wagner Günter P. Evolution of placental invasion and cancer metastasis are causally linked. Nat Ecol Evol. 2019 Dec;3(12):1743-1753.

November 2019

McGregor Douglas D, Fraser David R, Parker James SLTracking Veterinary Students Who Aspire to Careers in Science. J Vet Med Educ. 2019 Mar 28;1-6.

Hu MiYao, Depledge Daniel P, Cortes Esteban F, Breuer Judith, Schang Luis M. Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections. PLOS Pathogens. 2019 Nov 14;15(11).

Holmes Camille M, Violette Nathaniel, Miller Donald, Wagner Bettina, Svansson Vihjalmur, Antczak Douglas F. MHC haplotype diversity in Icelandic horses determined by polymorphic microsatellites. Genes Immun. 2019 Nov;20(8):660-670.

October 2019

Lu Yen-Chu, Chu Tinyi, Hall Matthew S, Fu Dah-Jiun, Shi Qquanming, Chiu Alan, An Duo, Wang Long-Hai, Pardo Yehudah, Southard Teresa, Danko Charles G, Liphardt Jan, Nikitin Alexander Y, Wu Mingming, Fischbach Claudia, Coonrod Scott, Ma Minglin. (2019). Physical confinement induces malignant transformation in mammary epithelial cells. Biomaterials. 2019 Oct;217:119307.

Lee Hyunhook, Callaway Heather M, Cifuente Javier O, Bator Carol M, Parrish Colin R, Hafenstein Susan L. Transferrin receptor binds virus capsid with dynamic motionProc Natl Acad Sci U S A. 2019 Oct 8;116(41):20462-20471. 

September 2019

Ray Judhajeet*, Munn Paul R*, Vihervaara Anniina, Lewis James J, Ozer Abdullah¥, Danko Charles G¥, Lis JT¥ (2019). Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock. Proc Natl Acad Sci U S A. 2019 Sep 10. pii: 201901244.

Tramontano Enzo, Tarbet Bart, Spengler Jessica R, Seley-Radtke Katherine, Meier Chris, Jordan Robert, Janeba Zlatko, Gowen Brian, Gentry Brian, Esté Jose A, Bray Mike, Andrei Graciela, Schang Luis M; on behalf of the International Society for Antiviral Research – ISAR. Meeting report: 32nd International conference on antiviral research. Antiviral Res. 2019 Sep;169:104550.

Wasik Brian R, de Wit Emmie, Munster Vincent, Lloyd-Smith James O, Martinez-Sobrido Luis, Parrish Colin ROnward transmission of viruses: how do viruses emerge to cause epidemics after spillover?Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20190017. 

Wasik Brian R, Voorhees Ian EH, Barnard Karen N, Alford-Lawrence Brynn K, Weichert Wendy S, Hood Grace, Nogales Aitor, Martínez-Sobrido Luis, Holmes Edward C, Parrish Colin R, Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation. Journal of Virology. 11 Sep 2019

Pepin, Kim M, Hopken Matthew W, Shriner Susan A, Spackman Erica, Abdo, Zaid, Parrish Colin, Riley, Steven, Lloyd-Smith, James O, Piaggio Antoinette J. Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillancePhilos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20180346

August 2019

Tomlinson Joy E, Van de Walle Gerlinde R, Divers Thomas J. What do we know about hepatitis viruses in horses? Vet Clin North Am Equine Pract. 2019 Aug; 35(2):351-362.

Mishra Neha, Schwerdtner Lidja, Sams Kelly, Mondal Santanu, Ahmad Fareed, Schmidt Reinhold E, Coonrod Scott A, Thompson Paul R, Lerch Markus M, Bossaller Lukas. Cutting Edge: Protein Arginine Deiminase 2 and 4 Regulate NLRP3 Inflammasome-Dependent IL-1β Maturation and ASC Speck Formation in Macrophages. J Immunol. 2019 Aug 15;203(4):795-800.

July 2019

Chou Shao-Pei, Danko Charles G¥ (2019). AlleleHMM: a data-driven method to identify allele-specific differences in distributed functional genomic marks. Nucleic Acids Research. 2019 June 20;47(11)

Bensing Barbara A, Li Liang, Yakovenko Olga, Wong Maurice, Barnard Karen N, Iverson Tina M, Lebrilla Carlito B, Parrish Colin R, Thomas Wendy E, Xiong Yan, Sullam Paul M. Recognition of specific sialoglycan structures by oral streptococci impacts the severity of endocardial infectionPLoS Pathog. 2019 Jun;15(6):e1007896. 

Goetschius Daniel J, Parrish Colin R, Hafenstein Susan. Asymmetry in icosahedral virusesCurr Opin Virol. 2019 Jun 27;36:67-73.

Parrish Colin R, Voorhees Ian EH. H3N8 and H3N2 Canine Influenza Viruses: Understanding These New Viruses in Dogs. Vet Clin North Am Small Anim Pract. 2019 Jul;49(4):643-649.

Fiscal Year 2019 Publications
Fiscal Year 2018 Publications
Fiscal Year 2017 Publications